Siesta

De acordo com a página do Siesta, “SIESTA is both a method and its computer program implementation, to perform efficient electronic structure calculations and ab initio molecular dynamics simulations of molecules and solids. SIESTA’s efficiency stems from the use of strictly localized basis sets and from the implementation of linear-scaling algorithms which can be applied to suitable systems. A very important feature of the code is that its accuracy and cost can be tuned in a wide range, from quick exploratory calculations to highly accurate simulations matching the quality of other approaches, such as plane-wave and all-electron methods”.

Versões Disponíveis

  • siesta/4.0.2

  • siesta/4.1.5.mpi

  • siesta/4.1.5.serial

  • siesta/4.1-b3(default)

Submissão de Jobs em Paralelo

Crie um arquivo chamado, por exemplo, submit_paral_jobs.sh.

#!/bin/bash
#SBATCH -t 24:00:00 -n 16

export INPUT="ch4.fdf"
export OUTPUT="*"

module load siesta/4.1.5.mpi
job-nanny srun -n 16 siesta.mpi < ch4.fdf

Para submeter o processo, basta usar o comando:

sbatch submit_paral_jobs.sh

Submissão de Jobs Seriais

Crie um arquivo chamado, por exemplo, submit_serial_jobs.sh.

#!/bin/bash
#SBATCH -t 24:00:00

export INPUT="32_h2o.fdf"
export OUTPUT="*"

module load siesta
job-nanny siesta.serial < 32_h2o.fdf

Para submeter o processo, basta usar o comando:

sbatch submit_serial_jobs.sh

Referências

Para informações adicionais sobre o software, consulte a página do Siesta.