.. _Gamit:

Gamit
=====

De acordo com a `página do Gamit/Globk <http://www-gpsg.mit.edu/~simon/gtgk/index.htm>`_,
"*GAMIT, GLOBK, and TRACK form a comprehensive suite of programs for analyzing GPS
measurements primarily to study crustal deformation.*".


Versões Disponíveis
-------------------

* gamit/10.61
* gamit/10.70 (default)

Submissão de Jobs Seriais
-------------------------

Crie um arquivo chamado, por exemplo, *submit_serial_jobs.sh*.

.. code-block:: bash

   #!/bin/bash
   #SBATCH -t 7-00
   
   export INPUT="run.sh 2018 sites.defaults"
   export OUTPUT="*"

   module load gamit/10.70
   job-nanny ./run.sh

O script *run.sh* poderia ter o seguinte conteúdo:

.. code-block:: bash

   #!/bin/bash

   ln -s $GAMIT_PATH /home/your_username/gg
   
   mkdir 2018
   cd 2018/
   
   mkdir tables
   cp -r ../sites.defaults tables/.
   
   sh_setup -yr 2018
   
   ## Set your e-mail properly
   sed -i "s/set mailto = ''/set mailto = 'your_login@your_email.com.br'/" tables/process.defaults
   
   cd tables/
   sh_upd_stnfo -l sd
   mv station.info.new station.info
   cd ..
   
   sh_gamit -expt eura -gnss G -s 2018 095 097 -pres ELEV -orbit igsf -copt x k p -dopts c ao              > sh_gamit_2018G.log
   sh_gamit -expt eura -gnss R -s 2018 095 097 -jclock sp3 -pres ELEV -orbit codm -copt x k p -dopts c ao  > sh_gamit_2018R.log
   sh_gamit -expt eura -gnss E -s 2018 095 097 -pres ELEV -orbit codm -copt x k p -dopts c ao              > sh_gamit_2018E.log
   sh_gamit -expt eura -gnss C -s 2018 095 097 -pres ELEV -orbit codm -copt x k p -dopts c ao              > sh_gamit_2018C.log
   
   sh_glred -cmd > sh_glred.log
   
   sh_glred -s 2018 095 2018 097 -expt eura -gnss G R E C -opt R H G T                             > sh_glred_GREC.log
   sh_glred -s 2018 095 2018 097 -expt eura -netext G R E C -ncomb 3 -globk_cmd_prefix COMB -opt G > sh_glred_comb.log


Para submeter o processo, basta usar o comando:

.. code-block:: bash

   sbatch submit_serial_jobs.sh


Referências
-----------

Para informações adicionais sobre o software, consulte a `documentação do Gamit/Globk <http://www-gpsg.mit.edu/~simon/gtgk/down.htm>`_.